Publications (Period 2)

Calabrese, DR., Wang, L., Harms, MP., Ratnanather, JT., Miller, MI., Csernansky, JG. 2008. Cingulate gyrus neuroanatomy in schizophrenia subjects and their non-psychotic siblings. Schizophrenia Research 104:68-70.

Ceritoglu C, Oishi K, Li X, Chou M-C, Younes L, Albert M, Lyketsos C, van Zijl PCM, Miller MI, Mori S. 2009. Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging. Neuroimage. 47:618-627

Glaunès J, Qiu A, Miller MI, Younes L. 2008. Large Deformation Diffeomorphic Curve Matching, International Journal of Computer Vision. 80:317-336.

Lee N, Penumetcha N, Priebe CE,Miller MI, Ratnanather JT. 2008. Validation of Alternating Kernel Mixture Method: Application to Segmentation of Cortical and Sub-cortical Brain Structures. J. Biomedicine and Biotechnology. Volume 2008:346129

Lee N, Priebe CE, Ratnanather JT, Miller MI. 2007. Validation of Alternating Kernel Mixture Method Based Segmentation of the Human Brain. 2007 Frontiers in the Convergence of Bioscience and Information Technologies, pp. 477-481

Ma J, Miller MI, Trouve A, Younes L. 2008. Bayesian Template Estimation in Computational Anatomy, NeuroImage. 42:252-261

Mamah D, Harms MP, Wang L, Barch D, Thompson P, Kim J, Miller MI, Csernansky JG. 2008. Basal Ganglia Shape Abnormalities in the Unaffected Siblings of Schizophrenia Patients. Biol Psychiatry. 64:111-120.

Miller, MI, Priebe CE, Qiu A, Fischl B, Kolasny A, Brown T, Park Y, Ratnanather JT, Busa E, Jovicich J, Yu P, Dickerson BC, Buckner RL and Morphometry BIRN. 2008. Collaborative computational anatomy: An MRI morphometry study of the human brain via diffeomorphic metric mapping, Human Brain Mapping, 30:2132-2141.

Miller MI, Qiu A. 2009. The emerging discipline of Computational Functional Anatomy. NeuroImage, 45:S16-S39

Munn, M.A., Alexopoulos, J., Nishino, T., Babb, C.M., Flake, L.A., Singer, T., Ratnanather, J.T., Todd, R.D., Miller, M.I., Botteron, K.N. 2007. Amygdala volume analysis in female twins with major depression. Biological Psychiatry. 62:415-422

Oishi K, Zilles K, Amunts K, Faria A, Jiang H, Li X, Akhter K, Hua K, Woods R, Toga AW, Pike GB, Rosa-Neto P, Evans A, Zhang J, Huang H, Miller MI, van Zijl PC, Mazziotta J, Mori S. 2008. Human brain white matter atlas: Identification and assignment of common anatomical structures in superficial white matterHuman brain white matter atlas: Identification and assignment of common anatomical structures in superficial white matter NeuroImage. 43:447-457.

Oishi K, Faria A, Jiang H, Li X, Akhter K, Zhang J, Hsu JT, Miller MI, van Zijl PC, Albert M, Lyketsos CG, Woods R, Toga AW, Pike GB, Rosa-Neto P, Evans A, Mazziotta J, Mori S. 2009. Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participantst. Neuroimage. 46:486-499.

Penumetcha N, Kabadi S, Jedynak B, Walcutt C, Gado MH, Wang L, Ratnanather JT. Feasability of geometric-intensity based semi-automated delineation of the tentorium cerebelli from MRI scans. J. Neuroimaging.

Qiu A, Taylor WD, Zhao Z, McFall JR, Miller MI, Rey CR, Payne ME, Steffens CD, Krishnan KRR. 2009. APOE related hippocampal shape alteration in geriatric depression. NeuroImage. 44:620-626.

Qiu A, Crocetti D, Adler M, Mahone EM, denckla M, Miller MI, Mostofsky SH. 2009. Basal Ganglia Volume and Shape in Children With Attention Deficit Hyperactivity Disorder. Am. J. Psychiatry. 166: 74-82.

Qiu A, Miller MI. 2008. Multi-Structure Network Shape Analysis via Normal Surface Momentum Maps, NeuroImage, 42:1430-1438

Qiu A, Younes L, Miller MI. 2007. Cortical hemisphere registration via large deformation diffeomorphic metric curve mapping. LNCS 4791:186-93.

Qiu A, Younes L, Miller MI, Csernansky JG. 2008. Parallel transport in diffeomorphisms distinguishes the time-dependent pattern of hippocampal surface deformation due to healthy aging and the dementia of the Alzheimer's type. Neuroimage 40:68-76.

Qiu A, Vaillant M, Barta P, Ratnanather JT, Miller MI. 2008. Region-of-interest-based analysis with application of cortical thickness variation of left planum temporale in schizophrenia and psychotic bipolar disorder. Hum. Brain Mapping. 29:973-985.

Qiu A, Younes L, Miller MI. 2008. Intrinsic and extrinsic analysis in computational anatomy. Neuroimage. 39:1803-14.

Qiu A, Younes L, Wang L, Ratnanather JT, Gillespie SK , Kaplan G, Csernansky JG, Miller, MI. 2007. Combining anatomical manifold information via diffeomorphic metric mappings for studying cortical thinning of the cingulate gyrus in schizophrenia. Neuroimage. 37:821-33.

Qiu A, Fennema-Notestine C, Dale AM, Miller MI and ADNI. 2009. Regional shape abnormalities in mild cognitive impairment and Alzheimer's disease. Neuroimage. 45:656-661.

Wang L, Mamah D, Harms MP, Karnik M, Price JL, Gado MH, Thompson PA, Barch DM, Miller Mi, Csernansky JG. 2008. Progressive Deformation of Deep Brain Nuclei and Hippocampal-Amygdala Formation in Schizophrenia Biol. Psych. 64:1060-1068.

Wang L, Hosakere M, Trein JC, Miller A, Ratnanather JT, Barch DM, Thompson PA, Qiu A, Gado MH, Miller MI, Csernansky JG. 2007. Abnormalities of cingulate gyrus neuroanatomy in schizophrenia. Schizophr Res. 93:66-78.

Wang L, Beg F, Ratnanather T, Ceritoglu C, Younes L, Morris JC, Csernansky JG, Miller MI. 2007. Large deformation diffeomorphism and momentum based hippocampal shape discrimination in dementia of the Alzheimer type. IEEE Trans Med Imaging. 26:462-70.

Wang L, Lee DY, Bailey E, Hartlein JM, Gado MH, Miller MI, Black KJ. 2007. Validity of large-deformation high dimensional brain mapping of the basal ganglia in adults with Tourette syndrome. Psychiatry Res. 154:181-190

Wang L, Khan A, Csernansky JG, Fischl B, Miller MI, Morris JC, Beg MF. 2009. Fully-automated, multi-stage hippocampus mapping in very mild Alzheimer disease. Hippocampus. 19:541-548

Younes L, Qiu A, Winslow RL, Miller MI. 2008. Transport of Relational Structures in Groups of Diffeomorphisms, Journal of Mathematical Imaging and Vision. 32:41-56

Zhang S, Younes L, Zweck J, Ratnanather JT. 2008. Diffeomorphic Surface Flow: a novel method of surface evolution. SIAM J. App. Math. 68:806-824

Zhang W, Li X, Zhang J, Lift A, Handly DF, van Zijl P, Miller MI, Younes L, Mori S. 2009. Landmark-referenced voxel-based analysis of diffusion tensor images of the brainstem white matter tracts: Application in patients with middle cerebral artery stroke. NeuroImage 44:906-913.

Publications (Period 1)

Barta, P., Miller, M.I., Qiu, A. 2005. A stochastic model for studying the laminar structure of cortex from MRI. IEEE Trans Med Imaging 24, 728-42.

Beg, M.F., Miller, M.I., Trouve, A., Younes, L. 2005. Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms. International Journal of Computer Vision 61, 139-157.

Y. Cao, M. I. Miller, S. Mori, R. L. Winslow and L. Younes, Diffeomorphic Matching of Diffusion Tensor Images, 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06), 2006, pp. 67.

Cao, Y., Miller, M.I., Winslow, R.L., Younes, L. 2005. Large deformation diffeomorphic metric mapping of vector fields. IEEE Trans Med Imaging 24, 1216-30.

Csernansky, J.G., Wang, L., Joshi, S.C., Ratnanather, J.T., Miller, M.I. 2004. Computational anatomy and neuropsychiatric disease: probabilistic assessment of variation and statistical inference of group difference, hemispheric asymmetry, and time-dependent change. Neuroimage 23 Suppl 1, S56-68.

Csernansky, J.G., Wang, L., Swank, J., Miller, J.P., Gado, M., McKeel, D., Miller, M.I., Morris, J.C. 2005. Preclinical detection of Alzheimer's disease: hippocampal shape and volume predict dementia onset in the elderly. Neuroimage 25, 783-92.

Holm, D.D., Ratnanather, J.T., Trouve, A., Younes, L. 2004. Soliton dynamics in computational anatomy. Neuroimage 23 Suppl 1, S170-8.

Huang, H., Zhang, J., Jiang, H., Wakana, S., Poetscher, L., Miller, M.I., van Zijl, P.C., Hillis, A.E., Wytik, R., Mori, S. 2005. DTI tractography based parcellation of white matter: application to the mid-sagittal morphology of corpus callosum. Neuroimage 26, 195-205.

Jovicich, J., Beg, M.F., Pieper, S., Priebe, C., Miller, M., Buckner, R., Rosen, B. 2005. Biomedical Informatics Research Network: Integrating Multi-Site Neuroimaging Data Acquisition, Data Sharing and Brain Morphometric Processing. In: Tsymbal, A., Cunningham, P., (Eds.), 18th IEEE Symposium on Computer-Based Medical Systems (CBMS'05). IEEE, Dublin, Ireland. pp. 288-293.

C. B. Kirwan, C. Jones, M. I. Miller and C. E. L. Stark, High-resolution FMRI investigation of the medial temporal lobe., Human Brain Mapping, 28, 959-966.

Miller, M.I. 2004. Computational anatomy: shape, growth, and atrophy comparison via diffeomorphisms. Neuroimage 23 Suppl 1, S19-33.

Miller M.I., Trouve A., Younes, L. 2006. Geodesic shooting in Computational Anatomy. J. Math. Imaging Vision. 24, 209-228

Miller, M.I., Trouve, A., Younes, L. 2002. On the metrics and euler-lagrange equations of computational anatomy. Annu Rev Biomed Eng 4, 375-405.

Miller, M.I., Beg, M.F., Ceritoglu, C., Stark, C. 2005. Increasing the power of functional maps of the medial temporal lobe by using large deformation diffeomorphic metric mapping. Proc Natl Acad Sci U S A 102, 9685-90.

Miller, M.I., Hosakere, M., Barker, A.R., Priebe, C.E., Lee, N., Ratnanather, J.T., Wang, L., Gado, M., Morris, J.C., Csernansky, J.G. 2003. Labeled cortical mantle distance maps of the cingulate quantify differences between dementia of the Alzheimer type and healthy aging. Proc Natl Acad Sci U S A 100, 15172-7.

Posener, J.A., Wang, L., Price, J.L., Gado, M.H., Province, M.A., Miller, M.I., Babb, C.M., Csernansky, J.G. 2003. High-dimensional mapping of the hippocampus in depression. Am J Psychiatry 160, 83-9.

Priebe, C.E., Miller, M.I., Ratnanather, J.T. 2006. Segmenting magnetic resonance images via hierarchical mixture modelling. Computational Statistics & Data Analysis 50, 551-567.

Qiu A., Rosenau B.J., Greenberg A.S., Hurdal M.K., Barta P., Yantis S., Miller M.I. 2005 Estimating linear cortical magnification in human primary visual cortex via dynamic programming. NeuroImage. 31, 125-138

Ratnanather, J.T., Wang, L., Nebel, M.B., Hosakere, M., Han, X., Csernansky, J.G., Miller, M.I. 2004. Validation of semiautomated methods for quantifying cingulate cortical metrics in schizophrenia. Psychiatry Res 132, 53-68.

Ratnanather, J.T., Barta, P.E., Honeycutt, N.A., Lee, N., Morris, H.M., Dziorny, A.C., Hurdal, M.K., Pearlson, G.D., Miller, M.I. 2003. Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. Neuroimage 20, 359-77.

M. Vaillant, A. Qiu, J. Glaunes and M. I. Miller, 2007 Diffeomorphic Metric Surface Mapping in Subregions of the Superior Temporal Gyrus, Neuroimage, 34, 1149-59.

Vaillant M., Glaunes J. 2005. Surface Matching via Currents. LNCS 3565:381-392.

Vaillant, M., Miller, M.I., Younes, L., Trouve, A. 2004. Statistics on diffeomorphisms via tangent space representations. Neuroimage 23 Suppl 1, S161-9.

Wang L., Miller J.P., Gado M.H., McKeel D.W., Rothermich M., Miller M.I., Morris J.C., Csernansky J.G. 2006 Abnormalities of hippocampal surface structure in very mild dementia of the Alzheimer type. NeuroImage. 30, 52-60

Wang, L., Swank, J.S., Glick, I.E., Gado, M.H., Miller, M.I., Morris, J.C., Csernansky, J.G. 2003. Changes in hippocampal volume and shape across time distinguish dementia of the Alzheimer type from healthy aging. Neuroimage 20, 667-82.

Zhang, J., Miller, M.I., Plachez, C., Richards, L.J., Yarowsky, P., van Zijl, P., Mori, S. 2005a. Mapping postnatal mouse brain development with diffusion tensor microimaging. Neuroimage 26, 1042-51.

Zhang, J., Chen, Y.B., Hardwick, J.M., Miller, M.I., Plachez, C., Richards, L.J., Yarowsky, P., van Zijl, P., Mori, S. 2005b. Magnetic resonance diffusion tensor microimaging reveals a role for Bcl-x in brain development and homeostasis. J Neurosci 25, 1881-8.